wormbrowser

repo | gitter

lang(s): html5
keyword(s): data, anatomy, cells
contact: stephen@openworm.org

The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

Last generated 2023-04-21

openworm.github.io

repo | gitter | contributor guide

lang(s): html5
keyword(s): website
current version: 2017-12-13 DEPLOYED_121317 (DEPLOYED_121317)
contact: stephen@openworm.org

OpenWorm Website

Last generated 2023-05-20

org.geppetto

repo | gitter

current version: 2019-05-14 Geppetto Release 1.0.0 alpha (v1.0.0-alpha)
contact: matteo@geppetto.org

Geppetto - An open platform for life sciences data exploration, visualization and simulation

Last generated 2023-06-21

CElegansNeuroML

repo

lang(s): python
keyword(s): cells, channels, synapses, neurons, simulation, conductance-based models, gap junctions, neurotransmitters
contact: stephen@openworm.org

NeuroML based C elegans model, contained in a neuroConstruct project

Last generated 2023-04-21

CyberElegans

repo | gitter

lang(s): c++
keyword(s): simulation, worm body
contact: skhayrulin@openworm.org

Neuromechanical model of C. Elegans

Last generated 2023-04-21

muscle_model

repo

lang(s): python
keyword(s): mathematical model, conductance model, muscles, cells, channels
current version: 2018-12-05 v0.1 (v0.1)
contact: stephen@openworm.org

Model of c.elegans muscle based on Boyle & Cohen 2008

Last generated 2023-04-21

sibernetic

repo | gitter

lang(s): c++, python
keyword(s): simulation, physics, particles, worm body
current version: 2015-07-28 ['0.0.3']
contact: palyanov.andrey@openworm.org

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics simulations related features applied to C. elegans locomotion

Last generated 2023-06-18

OpenWorm

repo | contributor guide

current version: 2022-08-15 0.9.2 (0.9.2)
contact: stephen@openworm.org

Project Home repo for Central Dockerfile and Project-wide issues

Last generated 2023-06-24

openwormbrowser-ios

repo

lang(s): Objective-C
keyword(s): iOs, data, anatomy, cells
contact: stephen@openworm.org

OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser

Last generated 2021-01-03

sibernetic_config_gen

repo | gitter

lang(s): python
keyword(s): simulation, physics, particles, worm body, configuration
contact: skhayrulin@openworm.org

Generates starting scene configuration for the Sibernetic simulation engine

Last generated 2021-04-21

openworm_docs

repo | contributor guide

lang(s): markdown
keyword(s): readthedocs, documenation
contact: stephen@openworm.org

Documentation for OpenWorm

Last generated 2023-04-21

Blender2NeuroML

repo

lang(s): python
keyword(s): 3D, Blender, NeuroML, neurons
contact: skhayrulin@openworm.org

Interface between Sibernetic and NEURON simulator

Last generated 2023-06-14

open-worm-analysis-toolbox

repo | gitter

lang(s): python
keyword(s): data, tools
contact: mcurrie@openworm.org

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

Last generated 2023-06-11

owmeta

repo

current version: 2020-10-15 Release 0.12.2 (v0.12.2)
contact: stephen@openworm.org

Unified, simple data access python library for data & facts about C. elegans anatomy

Last generated 2023-04-21

skeletonExtraction

repo | gitter

lang(s): c++
keyword(s): simulation, animation, COLLADA, worm body
contact: matteo@openworm.org

Transforms Sibernetic output into a COLLADA animation

Last generated 2021-12-06

YAROM

repo

Contains some RDF-Python mapping logic used by PyOpenWorm

Last generated 2021-03-06

hodgkin_huxley_tutorial

repo

lang(s): markdown
keyword(s): tutorial, simulation, conductance-based models
current version: 2022-07-26 Release v0.1.1 (v0.1.1)
contact: stephen@openworm.org

Hodgkin Huxley Tutorial

Last generated 2023-04-29

sibernetic_NEURON

repo | gitter

lang(s): NEURON, python
keyword(s): simulation, NEURON, particles, worm body
contact: skhayrulin@openworm.org

Interface between Sibernetic and NEURON simulator

Last generated 2021-04-21

tracker-commons

repo | gitter

lang(s): scala, python, java, r, julia, octave, matlab, c, c++
keyword(s): data
current version: 2016-04-17 ['beta 1.1.0']
contact: mcurrie@openworm.org

Compilation of information and code bases related to open-source trackers for C. elegans

Last generated 2023-05-22

neuronal-analysis

repo | gitter

lang(s): python
keyword(s): analysis, neurons, data
contact: stephen@openworm.org

Tools to produce, analyse and compare both simulated and recorded neuronal dataset

Last generated 2023-04-21

simple-C-elegans

repo | gitter

lang(s): python
keyword(s): data, simulation, cells, channels, synapses, gap junctions, neurotransmitters
contact: stephen@openworm.org

Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics

Last generated 2023-04-21

JohnsonMailler_MuscleModel

repo

lang(s): python
keyword(s): mathematical model, conductance model, muscles, cells, channels
contact: p.gleeson@gmail.com

Model of c.elegans muscle based on Johnson & Mailler, 2015

Last generated 2021-03-06

c302

repo

lang(s): Python
keyword(s): cells, channels, synapses, neurons, simulation, conductance-based models, gap junctions, neurotransmitters
current version: 2018-07-31 v0.7.0 (v0.7.0)
contact: p.gleeson@gmail.com

NeuroML based model of C. elegans nervous system

Last generated 2023-06-13