wormbrowser

repo | gitter

The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans

Last generated 2021-03-06

openworm.github.io

repo | gitter | contributor guide

  • lang(s): html5

  • keyword(s): website

  • current version: 2017-12-13 DEPLOYED_121317 (DEPLOYED_121317)

  • contact: stephen@openworm.org

OpenWorm Website

Last generated 2021-06-03

org.geppetto

repo | gitter

  • current version: 2019-05-14 Geppetto Release 1.0.0 alpha (v1.0.0-alpha)

  • contact: matteo@geppetto.org

Geppetto - An open platform for life sciences data exploration, visualization and simulation

Last generated 2021-05-09

CElegansNeuroML

repo

  • lang(s): python

  • keyword(s): cells, channels, synapses, neurons, simulation, conductance-based models, gap junctions, neurotransmitters

  • contact: stephen@openworm.org

NeuroML based C elegans model, contained in a neuroConstruct project

Last generated 2021-06-08

CyberElegans

repo | gitter

Neuromechanical model of C. Elegans

Last generated 2021-03-06

muscle_model

repo

  • lang(s): python

  • keyword(s): mathematical model, conductance model, muscles, cells, channels

  • current version: 2018-12-05 v0.1 (v0.1)

  • contact: stephen@openworm.org

Model of c.elegans muscle based on Boyle & Cohen 2008

Last generated 2021-06-07

sibernetic

repo | gitter

  • lang(s): c++, python

  • keyword(s): simulation, physics, particles, worm body

  • current version: 2015-07-28 ['0.0.3']

  • contact: palyanov.andrey@openworm.org

This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics simulations related features applied to C. elegans locomotion

Last generated 2021-05-24

OpenWorm

repo | contributor guide

Project Home repo for Central Dockerfile and Project-wide issues

Last generated 2021-06-07

openwormbrowser-ios

repo

OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser

Last generated 2021-01-03

sibernetic_config_gen

repo | gitter

  • lang(s): python

  • keyword(s): simulation, physics, particles, worm body, configuration

  • contact: skhayrulin@openworm.org

Generates starting scene configuration for the Sibernetic simulation engine

Last generated 2021-04-21

openworm_docs

repo | contributor guide

Documentation for OpenWorm

Last generated 2021-06-02

Blender2NeuroML

repo

Interface between Sibernetic and NEURON simulator

Last generated 2021-03-06

open-worm-analysis-toolbox

repo | gitter

A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.

Last generated 2021-03-06

owmeta

repo

Unified, simple data access python library for data & facts about C. elegans anatomy

Last generated 2021-05-14

skeletonExtraction

repo | gitter

  • lang(s): c++

  • keyword(s): simulation, animation, COLLADA, worm body

  • contact: matteo@openworm.org

Transforms Sibernetic output into a COLLADA animation

Last generated 2021-06-07

YAROM

repo

Contains some RDF-Python mapping logic used by PyOpenWorm

Last generated 2021-03-06

hodgkin_huxley_tutorial

repo

  • lang(s): markdown

  • keyword(s): tutorial, simulation, conductance-based models

  • current version: 2018-11-21 v0.1 (v0.1)

  • contact: stephen@openworm.org

Hodgkin Huxley Tutorial

Last generated 2021-06-07

sibernetic_NEURON

repo | gitter

Interface between Sibernetic and NEURON simulator

Last generated 2021-04-21

tracker-commons

repo | gitter

  • lang(s): scala, python, java, r, julia, octave, matlab, c, c++

  • keyword(s): data

  • current version: 2016-04-17 ['beta 1.1.0']

  • contact: mcurrie@openworm.org

Compilation of information and code bases related to open-source trackers for C. elegans

Last generated 2021-03-06

neuronal-analysis

repo | gitter

Tools to produce, analyse and compare both simulated and recorded neuronal dataset

Last generated 2021-04-21

simple-C-elegans

repo | gitter

  • lang(s): python

  • keyword(s): data, simulation, cells, channels, synapses, gap junctions, neurotransmitters

  • contact: stephen@openworm.org

Minimalist Python code -- based on OpenWorm and the published literature -- for modeling C. elegans neural network dynamics

Last generated 2021-03-06

JohnsonMailler_MuscleModel

repo

  • lang(s): python

  • keyword(s): mathematical model, conductance model, muscles, cells, channels

  • contact: p.gleeson@gmail.com

Model of c.elegans muscle based on Johnson & Mailler, 2015

Last generated 2021-03-06

c302

repo

  • lang(s): Python

  • keyword(s): cells, channels, synapses, neurons, simulation, conductance-based models, gap junctions, neurotransmitters

  • current version: 2018-07-31 v0.7.0 (v0.7.0)

  • contact: p.gleeson@gmail.com

NeuroML based model of C. elegans nervous system

Last generated 2021-06-07

owmeta-core

repo

  • current version: 2020-11-21 Release 0.13.1 (v0.13.1)

  • contact:

Unified, simple data access python library for data & facts about C. elegans anatomy

Last generated 2021-03-14

owmeta-sciunit

repo

Classes for describing SciUnit models, tests, and results with owmeta

Last generated 2021-04-23

owmeta-modeldb

repo

Tools for retrieving ModelDB models and using them within the owmeta framework

Last generated 2021-05-10

owmeta-movement

repo

Tools for managing C. elegans movement data with owmeta

Last generated 2021-04-22